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InterPro

Look up protein families, domains and sites in InterPro, EMBL-EBI's classification of protein sequences that brings Pfam, CATH-Gene3D and other databases together.

actions
10

Actions

Steps a workflow can run in InterPro.

  • Search entriesSearch InterPro's protein families, domains and sites, or one member database's signatures such as Pfam's, by words, kind, Gene Ontology term or only those new in the latest release. Each comes with its type, member signatures, GO terms and how many proteins and structures have it. No API key required.
  • Get an entryLook up one InterPro entry or member database signature by accession: its description in plain text with numbered references, GO terms, member signatures, parent and child entries, Pfam clan, how many proteins, structures and organisms have it, and the literature. No API key required.
  • List a protein's entriesList the families, domains and sites InterPro finds in a UniProt protein, or one member database's matches, with where each lies on the sequence. No API key required.
  • Get a proteinLook up a UniProt protein as InterPro holds it: name, gene, organism, length, sequence, whether it is reviewed, its function and GO terms, and how many InterPro entries and structures it has. No API key required.
  • List an entry's proteinsList the UniProt proteins an InterPro entry or member signature is found in, reviewed only or all, optionally in one organism, with each protein's name, organism and where the entry lies on it. No API key required.
  • Get a structureLook up a PDB structure in InterPro: its title, method, resolution, release date, chains and paper, and the families and domains mapped onto each chain. No API key required.
  • List an entry's structuresList the PDB structures an InterPro entry or member signature is found in, optionally by method and best resolution, with the chains it matches. No API key required.
  • Count an entry's proteins by organismCount how many proteins and structures have an InterPro entry or member signature in an organism or group, such as eukaryotes or humans, and in each group directly below it. No API key required.
  • Search Pfam clansSearch Pfam's clans, the groups of related protein families, by words, or list them all, each with its description and how many families and proteins it covers. No API key required.
  • Get a Pfam clanLook up a Pfam clan by accession: its description, authors, member families and how many proteins, structures and organisms they cover. No API key required.

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