All integrationsResearch & Academia

Europe PMC

Search over 45 million life-science papers, preprints and patents, and read an article's record, citations, references, linked data, text-mined genes and diseases, open-access full text and preprint reviews.

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Triggers

Start a workflow when something happens in Europe PMC.

  • Europe PMC New PublicationTriggers when Europe PMC adds a publication matching a search, with its abstract

Actions

Steps a workflow can run in Europe PMC.

  • Search publicationsSearch over 45 million life-science papers, preprints, patents and theses by words or Europe PMC's search syntax. Narrow by source, publication dates and open access, and sort by relevance, date or citations. Returns one page; pass 'next_cursor' back for the next.
  • Count publicationsCount how many publications match a search, in all and per source (PubMed, preprints, patents...), with how many are open access, have full text, are reviews or are books.
  • List search fieldsList the fields a search can be narrowed by, such as TITLE, AUTH (author), JOURNAL, PUB_YEAR or GRANT_AGENCY, to write queries like TITLE:"gene editing" AND PUB_YEAR:2024.
  • Get articleGet an article's full record: title, abstract, authors with ORCID iDs and affiliations, journal, MeSH terms, keywords, funding, licence, links to read it, and any retraction or erratum notices.
  • List citing articlesList the publications that cite an article, newest first, a page at a time.
  • List referencesList the works an article cites, in reference-list order, with each one's Europe PMC record when it has one.
  • Get linked dataGet the data linked to an article: database records, sequences, protein structures, datasets, clinical trials and more, whether cited in the text or deposited with it.
  • Get Labs linksGet the outside resources that link to an article through Europe PMC's Labs, such as Wikipedia pages, BioStudies records and protocols.
  • Get text-mined termsGet the genes, proteins, diseases, chemicals, organisms, methods and other terms text mining found in an article, each with how often and in which sections it is mentioned, and optionally every mention in context.
  • Get full textGet an open-access article's full text, as plain text (title, abstract, body and section headings) and as its original JATS XML. For an article that is not open access, 'available' is false and says why, rather than failing the step.
  • Get preprint reviewsGet the peer reviews and evaluations published about a preprint version, with where each was published and a link to read it.
  • Find articles mentioning a termFind articles in which text mining tagged a gene, disease, chemical or other term, with the sentences that mention it. Returns up to 8 articles a page.
  • Find articles linking two termsFind articles in which text mining found two terms related, such as a gene and a disease, with the sentences that relate them. Returns up to 8 articles a page.
  • Check for retractionsCheck up to 1000 articles at once for retractions and other status updates since they were published, with the notice behind each. Handy for vetting a reference list.
  • Search grantsSearch the research grants of Europe PMC's funders (Wellcome, UKRI, the European Research Council and more) by topic, funder, grant number, holder, institution or a date they were running on. Each grant comes with a query for the papers it funded.

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